PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028306m
Common NameCICLE_v10028294mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 491aa    MW: 54213.8 Da    PI: 9.9427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028306mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146484323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+k F r  nL+ H r H
  Ciclev10028306m 64 CEICNKGFQRDQNLQLHRRGH 84
                     *******************88 PP

2zf-C2H211.90.00069138160123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Ciclev10028306m 138 WKCEKCSKKYAVQSDWKAHSKIC 160
                      58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-76184No hitNo description
SMARTSM003550.116284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355110103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-7133158No hitNo description
SMARTSM00355140138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MMSQDHGLSV PSTLKGFVQE PNSNPNPNPS SNQLKRKRNL PGTPDAEVIA LSPKSLMATN  60
RFLCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVRK KVYICPEKSC VHHDPSRALG  120
DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTREYRCDCG TLFSRKDSFI  180
THRAFCDALA EESARFTTIS STNPQAAAAI PQFSSVFRQQ QQSAPGSELA GNNVIADGQK  240
PRLPLWLDQA NNSNAMLTPI GSSSTGLPEL SQMVSPMNMF GSLSQMQWFS GGANLSMSSS  300
SSLPRGIPKE EEENKAYNLS ESMTSLYPSN QSGQQQQQQQ QQQQQGLAHM SATALLQKAA  360
QMGSTRSNAN NSTGFGLMST SFNSFNQTDK NELHKFFKQP NQQVADNDQN LNELIMNSFS  420
CPTNMGAVAG SSNASLLMAN AKNASNEAER RLTRDFLGVG VESSRPLSQQ ELAKFMNLSS  480
QYGGNPHHRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188100KLKQRTNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.224550.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424605.10.0hypothetical protein CICLE_v10028294mg
SwissprotQ700D21e-119IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLV4SG910.0V4SG91_9R
STRINGVIT_06s0004g03070.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-105C2H2-like zinc finger protein